Publications

http://web.njit.edu/~wangj/publications/biokdd.html

Edited by Jason T. L. Wang, Mohammed J. Zaki , Hannu T. T. Toivonen , Dennis Shasha

Springer, October 2004, ISBN 1-85233-671-4

Part I: Overview

1. Introduction to Data Mining in Bioinformatics;
2. Survey of Biodata Analysis from a Data Mining Perspective;

Part II: Sequence and Structure Alignment

3. AntiClustAl: Multiple Sequence Alignment by Antipole Clustering;
4. RNA Structure Comparison and Alignment;

Part III: Biological Data Mining

5. Piecewise Constant Modeling of Sequential Data Using Reversible Jump Markov Chain Monte Carlo;
6. Gene Mapping by Pattern Discovery;
7. Predicting Protein Folding Pathways;
8. Data Mining Methods for a Systematics of Protein Subcellular Location;
9. Mining Chemical Compounds;

Part IV: Biological Data Management

10. Phyloinformatics: Toward a Phylogenetic Database;
11. Declarative and Efficient Querying on Protein Secondary Structures;
12. Scalable Index Structures for Biological Data;