Software

ProbeExplorer, a free open access bionformatic tool for researchers working on Gene Expression and Microarrays.

http://probeexplorer.cicancer.org/

Summary: What is ProbeExplorer?

ProbeExplorer is an open access web-based bioinformatic application designed to show the association between microarray oligonucleotide probes and transcripts in the genomic context, but flexible enough to serve as a simplified genome and transcriptome browser. Coordinates and sequences of the genomic entities (loci, exons, transcripts), including vector graphics outputs, are provided for fifteen metazoa organisms and two yeasts. Alignment tools are used to built the associations between Affymetrixmicroarrays probe sequences and the transcriptomes (for human, mouse, rat and yeasts). Search by keywords is available and user searches and alignments on the genomes can also be done using any DNA or protein sequence query.